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BMCBI
2011
14 years 7 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
ICDE
2006
IEEE
124views Database» more  ICDE 2006»
15 years 10 months ago
Systematic Approach for Optimizing Complex Mining Tasks on Multiple Databases
It has been well recognized that data mining is an interactive and iterative process. In order to support this process, one of the long-term goals of data mining research has been...
Ruoming Jin, Gagan Agrawal
BMCBI
2010
190views more  BMCBI 2010»
15 years 4 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
BMCBI
2002
137views more  BMCBI 2002»
15 years 3 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
DEXAW
1999
IEEE
98views Database» more  DEXAW 1999»
15 years 8 months ago
Shaping the Research Agenda for Security in E-Commerce
In this paper, we overview the current state-of-the-art and future trends in network security and argue that the security requirements of electronic commerce (e-commerce) applicat...
Rolf Oppliger