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» Responses of Fluctuating Biological Systems
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BMCBI
2006
105views more  BMCBI 2006»
13 years 8 months ago
Integrative investigation of metabolic and transcriptomic data
Background: New analysis methods are being developed to integrate data from transcriptome, proteome, interactome, metabolome, and other investigative approaches. At the same time,...
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ils...
GECCO
2003
Springer
103views Optimization» more  GECCO 2003»
14 years 1 months ago
MILA - Multilevel Immune Learning Algorithm
The biological immune system is an intricate network of specialized tissues, organs, cells, and chemical molecules. T-cell-dependent humoral immune response is one of the complex i...
Dipankar Dasgupta, Senhua Yu, Nivedita Sumi Majumd...
ESANN
2004
13 years 9 months ago
Input arrival-time-dependent decoding scheme for a spiking neural network
Spiking neurons model a type of biological neural system where information is encoded with spike times. In this paper, a new method for decoding input spikes according to their abs...
Hesham H. Amin, Robert H. Fujii
BMCBI
2007
157views more  BMCBI 2007»
13 years 8 months ago
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...
BMCBI
2007
102views more  BMCBI 2007»
13 years 8 months ago
qPIPSA: Relating enzymatic kinetic parameters and interaction fields
Background: The simulation of metabolic networks in quantitative systems biology requires the assignment of enzymatic kinetic parameters. Experimentally determined values are ofte...
Razif R. Gabdoulline, Matthias Stein, Rebecca C. W...