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» Retrieval of 3D protein structures
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3DOR
2009
13 years 11 months ago
SHREC'09 Track: Structural Shape Retrieval on Watertight Models
The annual SHape REtrieval Contest (SHREC) measures the performance of 3D model retrieval methods for several different types of models and retrieval purposes. In this contest the...
J. Hartveldt, Michela Spagnuolo, Apostolos Axenopo...
BMCBI
2010
120views more  BMCBI 2010»
13 years 10 months ago
Optimal contact definition for reconstruction of Contact Maps
Background: Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being pref...
Jose M. Duarte, Rajagopal Sathyapriya, Henning Ste...
IPPS
2005
IEEE
14 years 3 months ago
FROST: Revisited and Distributed
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
BMCBI
2007
100views more  BMCBI 2007»
13 years 9 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
CIBCB
2005
IEEE
14 years 3 months ago
A Neural Network for Predicting Protein Disorder using Amino Acid Hydropathy Values
— Proteins have been discovered to contain ordered regions and disordered regions, where ordered regions have a defined three-dimensional (3D) structure and disordered regions d...
Deborah Stoffer, L. Gwenn Volkert