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» Reversal Complexity Revisited
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JCB
2007
78views more  JCB 2007»
13 years 7 months ago
Sorting by Reciprocal Translocations via Reversals Theory
The understanding of genome rearrangements is an important endeavor in comparative genomics. A major computational problem in this field is finding a shortest sequence of genome...
Michal Ozery-Flato, Ron Shamir
SMC
2007
IEEE
122views Control Systems» more  SMC 2007»
14 years 1 months ago
Can complexity science support the engineering of critical network infrastructures?
— Considerable attention is now being devoted to the study of “complexity science” with the intent of discovering and applying universal laws of highly interconnected and evo...
David Alderson, John C. Doyle
STACS
2001
Springer
13 years 12 months ago
Small PCPs with Low Query Complexity
Most known constructions of probabilistically checkable proofs (PCPs) either blow up the proof size by a large polynomial, or have a high (though constant) query complexity. In thi...
Prahladh Harsha, Madhu Sudan
ICPP
2009
IEEE
14 years 2 months ago
Complexity Analysis and Performance Evaluation of Matrix Product on Multicore Architectures
The multicore revolution is underway, bringing new chips introducing more complex memory architectures. Classical algorithms must be revisited in order to take the hierarchical me...
Mathias Jacquelin, Loris Marchal, Yves Robert
CPM
2009
Springer
189views Combinatorics» more  CPM 2009»
14 years 2 months ago
Average-Case Analysis of Perfect Sorting by Reversals
A sequence of reversals that takes a signed permutation to the identity is perfect if it preserves all common intervals between the permutation and the identity. The problem of com...
Mathilde Bouvel, Cedric Chauve, Marni Mishna, Domi...