Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
We present a new construction based on modular groups. A novel element of our construction is to embed each input into a sequence of matrices with determinant ±1, the product of w...
A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
Distributed applications mostly interact by exchanging messages. For this purpose the messages often need to be ordered. Since today more and more mobile devices are used message o...
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...