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» Rounding of Sequences and Matrices, with Applications
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BMCBI
2005
94views more  BMCBI 2005»
13 years 6 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
CRYPTO
2003
Springer
98views Cryptology» more  CRYPTO 2003»
13 years 12 months ago
A Message Authentication Code Based on Unimodular Matrix Groups
We present a new construction based on modular groups. A novel element of our construction is to embed each input into a sequence of matrices with determinant ±1, the product of w...
Matthew Cary, Ramarathnam Venkatesan
COCOON
2008
Springer
13 years 8 months ago
Sequence Alignment Algorithms for Run-Length-Encoded Strings
A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
Guan-Shieng Huang, Jia Jie Liu, Yue-Li Wang
WIS
2004
13 years 8 months ago
Ordering in Mobile Networks Using Integrated Sequencers
Distributed applications mostly interact by exchanging messages. For this purpose the messages often need to be ordered. Since today more and more mobile devices are used message o...
Sven Bittner
RECOMB
2005
Springer
14 years 7 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...