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» SIMAGE: simulation of DNA-microarray gene expression data
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ICML
2005
IEEE
14 years 8 months ago
Active learning for sampling in time-series experiments with application to gene expression analysis
Many time-series experiments seek to estimate some signal as a continuous function of time. In this paper, we address the sampling problem for such experiments: determining which ...
Rohit Singh, Nathan Palmer, David K. Gifford, Bonn...
BMCBI
2006
198views more  BMCBI 2006»
13 years 7 months ago
Gene selection and classification of microarray data using random forest
Background: Selection of relevant genes for sample classification is a common task in most gene expression studies, where researchers try to identify the smallest possible set of ...
Ramón Díaz-Uriarte, Sara Alvarez de ...
BMCBI
2010
158views more  BMCBI 2010»
13 years 7 months ago
Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing
Background: Sustained research on the problem of determining which genes are differentially expressed on the basis of microarray data has yielded a plethora of statistical algorit...
Corey M. Yanofsky, David R. Bickel
SDM
2007
SIAM
98views Data Mining» more  SDM 2007»
13 years 9 months ago
Lattice based Clustering of Temporal Gene-Expression Matrices
Individuals show different cell classes when they are in the different stages of a disease, have different disease subtypes, or have different response to a treatment or envir...
Yang Huang, Martin Farach-Colton
BMCBI
2007
149views more  BMCBI 2007»
13 years 7 months ago
A unified framework for finding differentially expressed genes from microarray experiments
Background: This paper presents a unified framework for finding differentially expressed genes (DEGs) from the microarray data. The proposed framework has three interrelated modul...
Jahangheer S. Shaik, Mohammed Yeasin