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» SNAPper: gene order predicts gene function
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BMCBI
2005
132views more  BMCBI 2005»
13 years 8 months ago
Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein
Background: A large number of papers have been published on analysis of microarray data with particular emphasis on normalization of data, detection of differentially expressed ge...
Gajendra P. S. Raghava, Joon H. Han
SIGKDD
2002
113views more  SIGKDD 2002»
13 years 8 months ago
Combining Data and Text Mining Techniques for Yeast Gene Regulation Prediction: A Case Study
In order to solve task 2 of the KDD Cup 2002, we exploited various available information sources. In particular, use of relational information describing the interactions among ge...
Mark-A. Krogel, Marcus Denecke, Marco Landwehr, To...
JBCB
2010
138views more  JBCB 2010»
13 years 3 months ago
Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
Protein function prediction is an active area of research in bioinformatics. And yet, transfer of annotation on the basis of sequence or structural similarity remains widely used ...
Artem Sokolov, Asa Ben-Hur
BMCBI
2008
99views more  BMCBI 2008»
13 years 9 months ago
Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment
Background: Preparedness for a possible global pandemic caused by viruses such as the highly pathogenic influenza A subtype H5N1 has become a global priority. In particular, it is...
Dadabhai T. Singh, Rahul Trehan, Bertil Schmidt, T...
RECOMB
2012
Springer
11 years 11 months ago
A Model for Biased Fractionation after Whole Genome Duplication
Background: Paralog reduction, the loss of duplicate genes after whole genome duplication (WGD) is a pervasive process. Whether this loss proceeds gene by gene or through deletion...
David Sankoff, Chunfang Zheng, Baoyong Wang