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BMCBI
2004
130views more  BMCBI 2004»
13 years 8 months ago
PATTERNFINDER: combined analysis of DNA regulatory sequences and double-helix stability
Background: Regulatory regions that function in DNA replication and gene transcription contain specific sequences that bind proteins as well as less-specific sequences in which th...
Yanlin Huang, David Kowalski
ICAI
2007
13 years 10 months ago
Mining and Dynamic Simulation of Sub-Networks from Large Biomolecular Networks
Biomolecular networks dynamically respond to stimuli and implement cellular function. Understanding these dynamic changes is the key challenge for cell biologists. As biomolecular...
Xiaohua Hu, Fang-Xiang Wu, Michael K. Ng, Bahrad A...
PDCN
2007
13 years 10 months ago
Design and evaluation of an auto-memoization processor
This paper describes the design and evaluation of an auto-memoization processor. The major point of this proposal is to detect the multilevel functions and loops with no additiona...
Tomoaki Tsumura, Ikuma Suzuki, Yasuki Ikeuchi, Hir...
BMCBI
2007
141views more  BMCBI 2007»
13 years 8 months ago
HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
Erik Larsson, Per Lindahl, Petter Mostad
CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
14 years 13 days ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang