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» SNPs Problems, Complexity, and Algorithms
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MST
2002
169views more  MST 2002»
13 years 10 months ago
Bulk Synchronous Parallel Algorithms for the External Memory Model
Abstract. Blockwise access to data is a central theme in the design of efficient external memory (EM) algorithms. A second important issue, when more than one disk is present, is f...
Frank K. H. A. Dehne, Wolfgang Dittrich, David A. ...
DCOSS
2005
Springer
14 years 4 months ago
A Local Facility Location Algorithm for Sensor Networks
In this paper we address a well-known facility location problem (FLP) in a sensor network environment. The problem deals with finding the optimal way to provide service to a (poss...
Denis Krivitski, Assaf Schuster, Ran Wolff
BMCBI
2007
216views more  BMCBI 2007»
13 years 10 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 10 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky
JUCS
2010
117views more  JUCS 2010»
13 years 9 months ago
NP-completeness and FPT Results for Rectilinear Covering Problems
Abstract: This paper discusses three rectilinear (that is, axis-parallel) covering problems in d dimensions and their variants. The first problem is the Rectilinear Line Cover whe...
Vladimir Estivill-Castro, Apichat Heednacram, Fran...