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BMCBI
2011
13 years 5 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
ICDAR
2011
IEEE
12 years 10 months ago
Fast Key-Word Searching via Embedding and Active-DTW
—In this paper we present a novel approach for fast search of handwritten Arabic word-parts within large lexicons. The algorithm runs through three steps to achieve the required ...
Raid Saabni, Alex Bronstein
RECOMB
2010
Springer
14 years 19 days ago
Algorithms for Detecting Significantly Mutated Pathways in Cancer
Abstract. Recent genome sequencing studies have shown that the somatic mutations that drive cancer development are distributed across a large number of genes. This mutational heter...
Fabio Vandin, Eli Upfal, Benjamin J. Raphael
SAS
2009
Springer
212views Formal Methods» more  SAS 2009»
14 years 11 months ago
The Causal Graph Revisited for Directed Model Checking
Directed model checking is a well-established technique to tackle the state explosion problem when the aim is to find error states in large systems. In this approach, the state spa...
Martin Wehrle, Malte Helmert
BMCBI
2007
237views more  BMCBI 2007»
13 years 11 months ago
FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data
Background: Data clustering analysis has been extensively applied to extract information from gene expression profiles obtained with DNA microarrays. To this aim, existing cluster...
Limin Fu, Enzo Medico