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    BMCBI
    2010
    133views more  BMCBI 2010»
    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
    13 years 10 months ago
    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
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    Background: Many structural properties such as solvent accessibility, dihedral angles and helix-helix contacts can be assigned to each residue in a membrane protein. Independent s...
    Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paud...
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    BMCBI
    2007
    146views more  BMCBI 2007»
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    13 years 10 months ago
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
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    Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
    Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
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    BMCBI
    2010
    153views more  BMCBI 2010»
    Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
    13 years 10 months ago
    Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
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    Background: Cluster analysis, and in particular hierarchical clustering, is widely used to extract information from gene expression data. The aim is to discover new classes, or su...
    Eva Freyhult, Mattias Landfors, Jenny Önskog,...
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    BMCBI
    2007
    147views more  BMCBI 2007»
    Improved residue contact prediction using support vector machines and a large feature set
    13 years 10 months ago
    Improved residue contact prediction using support vector machines and a large feature set
    Download  www.eecs.ucf.edu
    Background: Predicting protein residue-residue contacts is an important 2D prediction task. It is useful for ab initio structure prediction and understanding protein folding. In s...
    Jianlin Cheng, Pierre Baldi
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    BMCBI
    2007
    89views more  BMCBI 2007»
    Comparing segmentations by applying randomization techniques
    13 years 10 months ago
    Comparing segmentations by applying randomization techniques
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    Background: There exist many segmentation techniques for genomic sequences, and the segmentations can also be based on many different biological features. We show how to evaluate ...
    Niina Haiminen, Heikki Mannila, Evimaria Terzi
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