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PDCN
2004
13 years 10 months ago
Scalable parallel algorithms for difficult combinatorial problems: A case study in optimization
A novel combination of emergent algorithmic methods, powerful computational platforms and supporting infrastructure is described. These complementary tools and technologies are us...
Faisal N. Abu-Khzam, Michael A. Langston, Pushkar ...
ICPPW
2009
IEEE
13 years 6 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
ISCA
2011
IEEE
238views Hardware» more  ISCA 2011»
13 years 18 days ago
Rebound: scalable checkpointing for coherent shared memory
As we move to large manycores, the hardware-based global checkpointing schemes that have been proposed for small shared-memory machines do not scale. Scalability barriers include ...
Rishi Agarwal, Pranav Garg, Josep Torrellas
IPPS
2009
IEEE
14 years 3 months ago
Scalability challenges for massively parallel AMR applications
PDE solvers using Adaptive Mesh Refinement on block structured grids are some of the most challenging applications to adapt to massively parallel computing environments. We descr...
Brian van Straalen, John Shalf, Terry J. Ligocki, ...
EUROPAR
2010
Springer
13 years 10 months ago
Multithreaded Geant4: Semi-automatic Transformation into Scalable Thread-Parallel Software
This work presents an application case study. Geant4 is a 750,000 line toolkit first designed in the mid-1990s and originally intended only for sequential computation. Intel's...
Xin Dong 0004, Gene Cooperman, John Apostolakis