We present a model for the parallel performance of algorithms that consist of concurrent, two-dimensional wavefronts implemented in a message passing environment. The model combine...
Adolfy Hoisie, Olaf M. Lubeck, Harvey J. Wasserman
With the widespread use of BLAST, many parallel versions of BLAST on cluster systems are announced, but little work has been done for the parallel execution in the search for indi...
Data services for the Grid have focussed so far primarily on virtualising access to distributed databases, and encapsulating file location. However, orchestration of services requ...
Andrew Woolf, Ray Cramer, Marta Gutierrez, Kerstin...
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
Nagiza F. Samatova, Al Geist, George Ostrouchov, A...
Transactional Memory (TM) provides mechanisms that promise to simplify parallel programming by eliminating the need for locks and their associated problems (deadlock, livelock, pr...
Hassan Chafi, Jared Casper, Brian D. Carlstrom, Au...