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IPPS
2003
IEEE
14 years 3 months ago
A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics
We have developed a new algorithm that allows the exhaustive determination of words of up to 12 nucleotides in DNA sequences. It is fast enough as to be used at a genomic scale ru...
Vicente Arnau, Ignacio Marín
SC
2003
ACM
14 years 3 months ago
Traffic-based Load Balance for Scalable Network Emulation
Load balance is critical to achieving scalability for large network emulation studies, which are of compelling interest for emerging Grid, Peer to Peer, and other distributed appl...
Xin Liu, Andrew A. Chien
CF
2010
ACM
14 years 3 months ago
Enabling a highly-scalable global address space model for petascale computing
Over the past decade, the trajectory to the petascale has been built on increased complexity and scale of the underlying parallel architectures. Meanwhile, software developers hav...
Vinod Tipparaju, Edoardo Aprà, Weikuan Yu, ...
IEEEPACT
2002
IEEE
14 years 3 months ago
Using the Compiler to Improve Cache Replacement Decisions
Memory performance is increasingly determining microprocessor performance and technology trends are exacerbating this problem. Most architectures use set-associative caches with L...
Zhenlin Wang, Kathryn S. McKinley, Arnold L. Rosen...
IPPS
2002
IEEE
14 years 3 months ago
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments
This paper is concerned with the efficient execution of multiplesequence alignmentmethodsin a multipleclientenvironment. Multiple sequence alignment (MSA) is a computationally ex...
Ümit V. Çatalyürek, Eric Stahlber...