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CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
13 years 9 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
VLDB
2001
ACM
148views Database» more  VLDB 2001»
14 years 4 days ago
Indexing and Querying XML Data for Regular Path Expressions
With the advent of XML as a standard for data representation and exchange on the Internet, storing and querying XML data becomes more and more important. Several XML query languag...
Quanzhong Li, Bongki Moon
RECOMB
2006
Springer
14 years 8 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
ICALP
2010
Springer
14 years 15 days ago
Additive Spanners in Nearly Quadratic Time
We consider the problem of efficiently finding an additive C-spanner of an undirected unweighted graph G, that is, a subgraph H so that for all pairs of vertices u, v, δH (u, v) ...
David P. Woodruff
BMCBI
2006
164views more  BMCBI 2006»
13 years 7 months ago
Evaluation of clustering algorithms for gene expression data
Background: Cluster analysis is an integral part of high dimensional data analysis. In the context of large scale gene expression data, a filtered set of genes are grouped togethe...
Susmita Datta, Somnath Datta