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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 2 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
VEE
2010
ACM
218views Virtualization» more  VEE 2010»
14 years 2 months ago
Improving compiler-runtime separation with XIR
Intense research on virtual machines has highlighted the need for flexible software architectures that allow quick evaluation of new design and implementation techniques. The inte...
Ben Titzer, Thomas Würthinger, Doug Simon, Ma...
IPPS
2009
IEEE
14 years 2 months ago
Annotation-based empirical performance tuning using Orio
In many scientific applications, significant time is spent tuning codes for a particular highperformance architecture. Tuning approaches range from the relatively nonintrusive (...
Albert Hartono, Boyana Norris, Ponnuswamy Sadayapp...
CODES
2006
IEEE
14 years 1 months ago
Generic netlist representation for system and PE level design exploration
Designer productivity and design predictability are vital factors for successful embedded system design. Shrinking time-to-market and increasing complexity of these systems requir...
Bita Gorjiara, Mehrdad Reshadi, Pramod Chandraiah,...
CGO
2007
IEEE
13 years 12 months ago
Profile-assisted Compiler Support for Dynamic Predication in Diverge-Merge Processors
Dynamic predication has been proposed to reduce the branch misprediction penalty due to hard-to-predict branch instructions. A recently proposed dynamic predication architecture, ...
Hyesoon Kim, José A. Joao, Onur Mutlu, Yale...