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BMCBI
2005
115views more  BMCBI 2005»
13 years 8 months ago
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
Background: Enhancements in sequencing technology have recently yielded assemblies of large genomes including rat, mouse, human, fruit fly, and zebrafish. The availability of larg...
Eric C. Rouchka, Abdelnaby Khalyfa, Nigel G. F. Co...
BMCBI
2005
158views more  BMCBI 2005»
13 years 8 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
JBI
2007
120views Bioinformatics» more  JBI 2007»
13 years 8 months ago
Measures of semantic similarity and relatedness in the biomedical domain
Measures of semantic similarity between concepts are widely used in Natural Language Processing. In this article, we show how six existing domain-independent measures can be adapt...
Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Pa...
BMCBI
2005
160views more  BMCBI 2005»
13 years 8 months ago
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
Background: In the context of the BioCreative competition, where training data were very sparse, we investigated two complementary tasks: 1) given a Swiss-Prot triplet, containing...
Frédéric Ehrler, Antoine Geissbü...
WIAS
2008
128views more  WIAS 2008»
13 years 8 months ago
Considering operational issues for multiagent conceptual inferencing in a distributed information retrieval application
Our system, based on a multiagent framework called collaborative understanding of distributed knowledge (CUDK), is designed with the overall goal of balancing agents' conceptu...
Leen-Kiat Soh