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IPPS
2010
IEEE
13 years 8 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
HPCA
2011
IEEE
13 years 1 months ago
Exploiting criticality to reduce bottlenecks in distributed uniprocessors
Composable multicore systems merge multiple independent cores for running sequential single-threaded workloads. The performance scalability of these systems, however, is limited d...
Behnam Robatmili, Madhu Saravana Sibi Govindan, Do...
PPOPP
2012
ACM
12 years 5 months ago
Massively parallel breadth first search using a tree-structured memory model
Analysis of massive graphs has emerged as an important area for massively parallel computation. In this paper, it is shown how the Fresh Breeze trees-of-chunks memory model may be...
Tom St. John, Jack B. Dennis, Guang R. Gao
HPCA
2008
IEEE
14 years 10 months ago
Thread-safe dynamic binary translation using transactional memory
Dynamic binary translation (DBT) is a runtime instrumentation technique commonly used to support profiling, optimization, secure execution, and bug detection tools for application...
JaeWoong Chung, Michael Dalton, Hari Kannan, Chris...
ICFP
2003
ACM
14 years 10 months ago
A static type system for JVM access control
This paper presents a static type system for JAVA Virtual Machine (JVM) code that enforces an access control mechanism similar to the one found, for example, in a JAVA implementat...
Tomoyuki Higuchi, Atsushi Ohori