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BMCBI
2008
141views more  BMCBI 2008»
13 years 8 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
BMCBI
2007
218views more  BMCBI 2007»
13 years 7 months ago
Annotation and query of tissue microarray data using the NCI Thesaurus
Background: The Stanford Tissue Microarray Database (TMAD) is a repository of data serving a consortium of pathologists and biomedical researchers. The tissue samples in TMAD are ...
Nigam H. Shah, Daniel L. Rubin, Inigo Espinosa, Ke...
BMCBI
2005
159views more  BMCBI 2005»
13 years 7 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...
CORR
2010
Springer
130views Education» more  CORR 2010»
13 years 5 months ago
Ontology-based Queries over Cancer Data
The ever-increasing amount of data in biomedical research, and in cancer research in particular, needs to be managed to support efficient data access, exchange and integration. Exi...
Alejandra González Beltrán, Ben Tagg...
SWAP
2007
13 years 9 months ago
Semantic Nearest Neighbor Search in OWL Ontologies
Abstract. A nearest neighbor search procedure is presented, for retrieving resources in knowledge bases expressed in OWL. The procedure exploits a semidistance for annotated resour...
Nicola Fanizzi, Claudia d'Amato, Floriana Esposito