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PAMI
2010
112views more  PAMI 2010»
13 years 6 months ago
Polynomial Time Algorithms for Ratio Regions and a Variant of Normalized Cut
—In partitioning, clustering, and grouping problems, a typical goal is to group together similar objects, or pixels in the case of image processing. At the same time, another goa...
Dorit S. Hochbaum
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
BMCBI
2002
76views more  BMCBI 2002»
13 years 7 months ago
The SGS3 protein involved in PTGS finds a family
Background: Post transcriptional gene silencing (PTGS) is a recently discovered phenomenon that is an area of intense research interest. Components of the PTGS machinery are being...
Alex Bateman
WABI
2009
Springer
14 years 2 months ago
MADMX: A Novel Strategy for Maximal Dense Motif Extraction
We develop, analyze and experiment with a new tool, called madmx, which extracts frequent motifs, possibly including don’t care characters, from biological sequences. We introduc...
Roberto Grossi, Andrea Pietracaprina, Nadia Pisant...
CDC
2008
IEEE
125views Control Systems» more  CDC 2008»
14 years 2 months ago
Dynamical structure analysis of sparsity and minimality heuristics for reconstruction of biochemical networks
— Network reconstruction, i.e. obtaining network structure from input-output information, is a central theme in systems biology. A variety of approaches aim to obtaining structur...
Russell Howes, Lee John Eccleston, Jorge M. Goncal...