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» Segment-based multiple sequence alignment
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BMCBI
2005
93views more  BMCBI 2005»
13 years 8 months ago
Multiple sequence alignment accuracy and evolutionary distance estimation
Background: Sequence alignment is a common tool in bioinformatics and comparative genomics. It is generally assumed that multiple sequence alignment yields better results than pai...
Michael S. Rosenberg
GECCO
2003
Springer
129views Optimization» more  GECCO 2003»
14 years 1 months ago
Evolutionary Two-Dimensional DNA Sequence Alignment
This article presents a model for DNA sequence alignment. In our model, a finite state automaton writes two-dimensional maps of nucleotide sequences. An evolutionary method for se...
Edgar E. Vallejo, Fernando Ramos
NAR
2006
128views more  NAR 2006»
13 years 8 months ago
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
Fabrice Armougom, Sébastien Moretti, Olivie...
ALMOB
2006
106views more  ALMOB 2006»
13 years 8 months ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
CIS
2004
Springer
14 years 1 months ago
Algorithms for Loosely Constrained Multiple Sequence Alignment
For finding accurate and biologically meaningful multiple sequence alignment, it is required to consider a loosely constrained version of multiple sequence alignment. This paper is...
Bin Song, Fengfeng Zhou, Guoliang Chen