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» Semantics of Biological Regulatory Networks
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CIBB
2008
13 years 9 months ago
Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets
Abstract. The analysis of large-scale regulatory models using data issued from genome-scale high-throughput experimental techniques is an actual challenge in the systems biology fi...
Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu...
IPPS
2003
IEEE
14 years 25 days ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
BIBE
2008
IEEE
102views Bioinformatics» more  BIBE 2008»
14 years 2 months ago
Motifs in regulatory networks and their structural robustness
: If we consider the regulatory networks used in systems biology (especially in neural and genetic networks), we observe certain regularities in their architecture, namely the occu...
Adrien Elena, Hedi Ben Amor, N. Glade, Jacques Dem...
CMA
2010
87views more  CMA 2010»
13 years 5 months ago
A modified uniformization method for the solution of the chemical master equation
The chemical master equation is considered an accurate description of general chemical systems, and especially so for modeling cell cycle and gene regulatory networks. This paper ...
Jingwei Zhang, Layne T. Watson, Yang Cao
CMSB
2010
Springer
13 years 2 months ago
Action-based analysis of discrete regulatory networks with short-term stimuli
To incorporate instant effects and different timescales within a single biological system, an extension of discrete regulatory networks with short-term stimuli is proposed. By mai...
Christian Krause, Carola Krause, Erik P. de Vink