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» Sequence Alignment as a Database Technology Challenge
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BMCBI
2006
120views more  BMCBI 2006»
13 years 7 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
ICCV
2009
IEEE
13 years 5 months ago
Simultaneous alignment and clustering for an image ensemble
Joint alignment for an image ensemble can rectify images in the spatial domain such that the aligned images are as similar to each other as possible. This important technology has...
Xiaoming Liu 0002, Yan Tong, Frederick W. Wheeler
NAR
2011
226views Computer Vision» more  NAR 2011»
12 years 10 months ago
The International Nucleotide Sequence Database Collaboration
Under the International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc. org), globally comprehensive public domain nucleotide sequence is captured, preserved ...
Guy Cochrane, Ilene Karsch-Mizrachi, Yasukazu Naka...
BMCBI
2006
159views more  BMCBI 2006»
13 years 7 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...
BMCBI
2008
150views more  BMCBI 2008»
13 years 7 months ago
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level
Background: The recent availability of complete sequences for numerous closely related bacterial genomes opens up new challenges in comparative genomics. Several methods have been...
Hélène Chiapello, Annie Gendrault, C...