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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2006
159views more  BMCBI 2006»
13 years 7 months ago
ProtRepeatsDB: a database of amino acid repeats in genomes
Background: Genome wide and cross species comparisons of amino acid repeats is an intriguing problem in biology mainly due to the highly polymorphic nature and diverse functions o...
Mridul K. Kalita, Gowthaman Ramasamy, Sekhar Durai...
BMCBI
2007
144views more  BMCBI 2007»
13 years 7 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
SIGMOD
2009
ACM
136views Database» more  SIGMOD 2009»
14 years 7 months ago
A comparison of approaches to large-scale data analysis
There is currently considerable enthusiasm around the MapReduce (MR) paradigm for large-scale data analysis [17]. Although the basic control flow of this framework has existed in ...
Andrew Pavlo, Erik Paulson, Alexander Rasin, Danie...
BMCBI
2005
81views more  BMCBI 2005»
13 years 7 months ago
Evolutionary sequence analysis of complete eukaryote genomes
Background: Gene duplication and gene loss during the evolution of eukaryotes have hindered attempts to estimate phylogenies and divergence times of species. Although current meth...
Jaime E. Blair, Prachi Shah, S. Blair Hedges
INFORMATICALT
2008
162views more  INFORMATICALT 2008»
13 years 7 months ago
Vague Rough Set Techniques for Uncertainty Processing in Relational Database Model
Abstract. The study of databases began with the design of efficient storage and data sharing techniques for large amount of data. This paper concerns the processing of imprecision ...
Karan Singh, Samajh Singh Thakur, Mangi Lal