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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2011
13 years 2 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
CORR
2010
Springer
123views Education» more  CORR 2010»
13 years 6 months ago
Feature Construction for Relational Sequence Learning
Abstract. We tackle the problem of multi-class relational sequence learning using relevant patterns discovered from a set of labelled sequences. To deal with this problem, firstly...
Nicola Di Mauro, Teresa Maria Altomare Basile, Ste...
BMCBI
2007
126views more  BMCBI 2007»
13 years 7 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
ICASSP
2011
IEEE
12 years 11 months ago
An effective foreground/background segmentation approach for bootstrapping video sequences
In this study, an effective foreground/background segmentation approach for bootstrapping video sequences is proposed. First, a modified block representation approach is used to c...
Han-Hui Hsiao, Jin-Jang Leou
NAR
2008
122views more  NAR 2008»
13 years 7 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...