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» Sequence Complexity for Biological Sequence Analysis
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BMCBI
2005
163views more  BMCBI 2005»
13 years 9 months ago
Alkahest NuclearBLAST: a user-friendly BLAST management and analysis system
Background -: Sequencing of EST and BAC end datasets is no longer limited to large research groups. Drops in per-base pricing have made high throughput sequencing accessible to in...
Stephen E. Diener, Thomas D. Houfek, Sam E. Kalat,...
ISMB
2000
13 years 10 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...
BMCBI
2002
133views more  BMCBI 2002»
13 years 9 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
ISAAC
2004
Springer
88views Algorithms» more  ISAAC 2004»
14 years 2 months ago
On the Range Maximum-Sum Segment Query Problem
The range minimum query problem, RMQ for short, is to preprocess a sequence of real numbers A[1 . . . n] for subsequent queries of the form: “Given indices i, j, what is the ind...
Kuan-Yu Chen, Kun-Mao Chao
CIBCB
2005
IEEE
13 years 11 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos