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» Sequence Complexity for Biological Sequence Analysis
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IWANN
2009
Springer
14 years 3 months ago
On the Bond Graphs in the Delaunay-Tetrahedra of the Simplicial Decomposition of Spatial Protein Structures
The examination of straightforwardly definable discrete structures in nucleic acids and proteins turned out to be perhaps the most important development in our present knowledge a...
Rafael Ördög, Vince Grolmusz
NAR
2006
85views more  NAR 2006»
13 years 9 months ago
WormBase: better software, richer content
WormBase (http://wormbase.org), the public database for genomics and biology of Caenorhabditis elegans, has been restructured for stronger performance and expanded for richer biol...
Erich M. Schwarz, Igor Antoshechkin, Carol Bastian...
STAIRS
2008
175views Education» more  STAIRS 2008»
13 years 10 months ago
Learning Process Behavior with EDY: an Experimental Analysis
This paper presents an extensive evaluation, on artificial datasets, of EDY, an unsupervised algorithm for automatically synthesizing a Structured Hidden Markov Model (S-HMM) from ...
Ugo Galassi
DAGSTUHL
2008
13 years 10 months ago
Real Algebraic Numbers: Complexity Analysis and Experimentation
Abstract. We present algorithmic, complexity and implementation results concerning real root isolation of a polynomial of degree d, with integer coefficients of bit size , using S...
Ioannis Z. Emiris, Bernard Mourrain, Elias P. Tsig...
RECOMB
2006
Springer
14 years 9 months ago
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
Abstract. During evolution, genomes are subject to genome rearrangements that alter the ordering and orientation of genes on the chromosomes. If a genome consists of a single chrom...
Martin Bader, Enno Ohlebusch