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» Sequence Complexity for Biological Sequence Analysis
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SIGMOD
2006
ACM
232views Database» more  SIGMOD 2006»
14 years 9 months ago
High-performance complex event processing over streams
In this paper, we present the design, implementation, and evaluation of a system that executes complex event queries over real-time streams of RFID readings encoded as events. The...
Eugene Wu 0002, Yanlei Diao, Shariq Rizvi
ARTMED
2005
87views more  ARTMED 2005»
13 years 9 months ago
Fuzzy attributes of a DNA complex: Development of a fuzzy inference engine for codon-"junk" codon delineation
Codons refer to those parts in a DNA complex encoded towards forming a desired set of proteins. Also coexist in the DNA are noncodons (or "junk" codons) whose functions ...
Tomás Arredondo Vidal, Perambur S. Neelakan...
BMCBI
2011
13 years 4 months ago
PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination
Background: We present a novel method to encode ambiguously aligned regions in fixed multiple sequence alignments by ‘Pairwise Identity and Cost Scores Ordination’ (PICS-Ord)....
Robert K. Luecking, Brendan P. Hodkinson, Alexandr...
BMCBI
2008
126views more  BMCBI 2008»
13 years 9 months ago
ISOL@: an Italian SOLAnaceae genomics resource
Background: Present-day `-omics' technologies produce overwhelming amounts of data which include genome sequences, information on gene expression (transcripts and proteins) a...
Maria Luisa Chiusano, Nunzio D'Agostino, Alessandr...
BMCBI
2007
216views more  BMCBI 2007»
13 years 9 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos