612 search results - page 27 / 123 » Sequence Database Search Using Jumping Alignments |
120
Voted
CIKM
2005
Springer
15 years 8 months ago
2005
Springer
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
149
click to vote
NAR
2011
14 years 5 months ago
2011
We updated the plant transcription factor (TF) database to version 2.0 (PlantTFDB 2.0, http:// planttfdb.cbi.pku.edu.cn) which contains 53 319 putative TFs predicted from 49 speci...
118
click to vote
BMCBI
2004
15 years 2 months ago
2004
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
125
click to vote
NAR
2007
15 years 2 months ago
2007
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
96
Voted
RECOMB
2003
Springer
16 years 2 months ago
2003
Springer
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...