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» Sequence Database Search Using Jumping Alignments
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130
Voted
BMCBI
2006
145views more  BMCBI 2006»
15 years 2 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
109
Voted
ICASSP
2011
IEEE
14 years 6 months ago
Prosodic control of unit-selection speech synthesis: A probabilistic approach
One problem in concatenative speech synthesis is how to incorporate prosodic factors in the unit selection. Imposing a predicted prosodic target is error-prone and does not benefi...
Christophe Veaux, Xavier Rodet
121
Voted
BMCBI
2006
113views more  BMCBI 2006»
15 years 2 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
BMCBI
2006
114views more  BMCBI 2006»
15 years 2 months ago
Impact of RNA structure on the prediction of donor and acceptor splice sites
Background: gene identification in genomic DNA sequences by computational methods has become an important task in bioinformatics and computational gene prediction tools are now es...
Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezesh...
142
Voted
BMCBI
2002
120views more  BMCBI 2002»
15 years 2 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam