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» Sequence Database Search Using Jumping Alignments
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115
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BMCBI
2008
142views more  BMCBI 2008»
15 years 2 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
95
Voted
CANDC
2006
ACM
15 years 2 months ago
Domain boundary prediction based on profile domain linker propensity index
Successful prediction of protein domain boundaries provides valuable information not only for the computational structure prediction of multidomain proteins but also for the exper...
Qiwen Dong, Xiaolong Wang, Lei Lin, Zhiming Xu
148
Voted
SIGMOD
2000
ACM
165views Database» more  SIGMOD 2000»
15 years 7 months ago
Finding Generalized Projected Clusters In High Dimensional Spaces
High dimensional data has always been a challenge for clustering algorithms because of the inherent sparsity of the points. Recent research results indicate that in high dimension...
Charu C. Aggarwal, Philip S. Yu
135
Voted
BMCBI
2007
162views more  BMCBI 2007»
15 years 2 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
104
Voted
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 8 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...