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» Sequence Database Search Using Jumping Alignments
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ESWS
2008
Springer
15 years 4 months ago
Graph Summaries for Subgraph Frequency Estimation
A fundamental problem related to graph structured databases is searching for substructures. One issue with respect to optimizing such searches is the ability to estimate the freque...
Angela Maduko, Kemafor Anyanwu, Amit P. Sheth, Pau...
BMCBI
2007
89views more  BMCBI 2007»
15 years 2 months ago
msmsEval: tandem mass spectral quality assignment for high-throughput proteomics
Background: In proteomics experiments, database-search programs are the method of choice for protein identification from tandem mass spectra. As amino acid sequence databases grow...
Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Car...
152
Voted
BMCBI
2011
14 years 6 months ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...
156
Voted
CORR
2011
Springer
140views Education» more  CORR 2011»
14 years 6 months ago
A Wiki for Business Rules in Open Vocabulary, Executable English
The problem of business-IT alignment is of widespread economic concern. As one way of addressing the problem, this paper describes an online system that functions as a kind of Wik...
Adrian Walker
BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
15 years 2 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...