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» Sequence Prediction Based on Monotone Complexity
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BMCBI
2006
108views more  BMCBI 2006»
13 years 10 months ago
SPIDer: Saccharomyces protein-protein interaction database
Background: Since proteins perform their functions by interacting with one another and with other biomolecules, reconstructing a map of the protein-protein interactions of a cell,...
Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zho...
RSCTC
2000
Springer
197views Fuzzy Logic» more  RSCTC 2000»
14 years 1 months ago
Rough Set Approach to CBR
We discuss how Case Based Reasoning (CBR) (see e.g. [1], [4]) philosophy of adaptation of some known situations to new similar ones can be realized in rough set framework [5] for c...
Jan Wierzbicki
BMCBI
2008
163views more  BMCBI 2008»
13 years 10 months ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
BMCBI
2008
105views more  BMCBI 2008»
13 years 10 months ago
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Background: Mining gene patterns that are common to multiple genomes is an important biological problem, which can lead us to novel biological insights. When family classification...
Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yan...
BMCBI
2007
148views more  BMCBI 2007»
13 years 9 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...