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FCCM
2007
IEEE
134views VLSI» more  FCCM 2007»
14 years 1 months ago
FPGA-accelerated seed generation in Mercury BLASTP
BLASTP is the most popular tool to perform comparative sequence analysis of protein sequences. An exponential increase in the size of protein sequence databases in recent years, h...
Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhle...
NAR
2011
235views Computer Vision» more  NAR 2011»
12 years 10 months ago
P2CS: a database of prokaryotic two-component systems
P2CS (http://www.p2cs.org) is a specialized database for prokaryotic two-component systems (TCSs), virtually ubiquitous signalling proteins which regulate a wide range of physiolo...
Mohamed Barakat, Philippe Ortet, David E. Whitwort...
BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
SIGMOD
2004
ACM
122views Database» more  SIGMOD 2004»
14 years 7 months ago
Adapting to Source Properties in Processing Data Integration Queries
An effective query optimizer finds a query plan that exploits the characteristics of the source data. In data integration, little is known in advance about sources' propertie...
Zachary G. Ives, Alon Y. Halevy, Daniel S. Weld
TMC
2008
112views more  TMC 2008»
13 years 7 months ago
Location-Based Spatial Query Processing in Wireless Broadcast Environments
Location-based spatial queries (LBSQs) refer to spatial queries whose answers rely on the location of the inquirer. Efficient processing of LBSQs is of critical importance with the...
Wei-Shinn Ku, Roger Zimmermann, Haixun Wang