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CEC
2009
IEEE
14 years 2 months ago
Evolutionary design of the energy function for protein structure prediction
— Automatic protein structure predictors use the notion of energy to guide the search towards good candidate structures. The energy functions used by the state-of-the-art predict...
Pawel Widera, Jonathan M. Garibaldi, Natalio Krasn...
ICSM
2009
IEEE
14 years 2 months ago
Modularizing error recovery
Error recovery is an integral concern in compilers. Improving error recovery requires comprehension of a large and complex code base, in order to locate the places which raise err...
Jeeva Paudel, Christopher Dutchyn
IEEEPACT
2009
IEEE
14 years 2 months ago
Automatic Tuning of Discrete Fourier Transforms Driven by Analytical Modeling
—Analytical models have been used to estimate optimal values for parameters such as tile sizes in the context of loop nests. However, important algorithms such as fast Fourier tr...
Basilio B. Fraguela, Yevgen Voronenko, Markus P&uu...
IPPS
2009
IEEE
14 years 2 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
CSEE
2009
Springer
14 years 2 months ago
Software Engineering Education for Bioinformatics
As software engineering educators, it is important for us to realize the increasing domainspecificity of software, and incorporate these changes in our design of teaching material...
Medha Umarji, Carolyn B. Seaman, Akif Günes K...