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» Shotgun Protein Sequencing
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ISMB
1994
13 years 9 months ago
Protein Design by Optimization of a Sequence-Structure Quality Function
Anautomatedprocedurefor protein designbyoptimization of a sequence-structurequalityhasbeendeveloped. Themethodselectsa statistically optimalsequencefor a particularstructure,onthe...
Steven E. Brenner, Alan Berry
BMCBI
2007
175views more  BMCBI 2007»
13 years 7 months ago
CLUSS: Clustering of protein sequences based on a new similarity measure
Background: The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important. The challenge is to identify subfamilies...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski...
HPDC
2010
IEEE
13 years 8 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BMCBI
2008
149views more  BMCBI 2008»
13 years 7 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...