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BIOCOMP
2006
13 years 11 months ago
TALI: Protein Structure Alignment Using Backbone Torsion Angles
- This article introduces a novel protein structure alignment method (named TALI) based on protein backbone torsion angle instead of the more traditional distance matrix. Represent...
Xijiang Miao, Michael Bryson, Homayoun Valafar
BMCBI
2005
61views more  BMCBI 2005»
13 years 9 months ago
SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
Background: The interacting residues of protein and nucleic acid sequences are close to each other
Jan C. Biro, Gergely Fördös
ALMOB
2008
82views more  ALMOB 2008»
13 years 10 months ago
Protein sequence and structure alignments within one framework
Background: Protein structure alignments are usually based on very different techniques to sequence alignments. We propose a method which treats sequence, structure and even combi...
Gundolf Schenk, Thomas Margraf, Andrew E. Torda
BMCBI
2010
98views more  BMCBI 2010»
13 years 10 months ago
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
Background: Prediction of protein structural classes (a, b, a + b and a/b) from amino acid sequences is of great importance, as it is beneficial to study protein function, regulat...
Jian-Yi Yang, Zhen-Ling Peng, Xin Chen
BMCBI
2007
265views more  BMCBI 2007»
13 years 10 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...