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BMCBI
2007
124views more  BMCBI 2007»
13 years 11 months ago
BranchClust: a phylogenetic algorithm for selecting gene families
Background: Automated methods for assembling families of orthologous genes include those based on sequence similarity scores and those based on phylogenetic approaches. The first ...
Maria S. Poptsova, J. Peter Gogarten
EDBT
2008
ACM
169views Database» more  EDBT 2008»
14 years 11 months ago
Efficient online top-K retrieval with arbitrary similarity measures
The top-k retrieval problem requires finding k objects most similar to a given query object. Similarities between objects are most often computed as aggregated similarities of the...
Prasad M. Deshpande, Deepak P, Krishna Kummamuru
BMCBI
2008
126views more  BMCBI 2008»
13 years 11 months ago
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Background: Obtaining physiological insights from microarray experiments requires computational techniques that relate gene expression data to functional information. Traditionall...
Anne M. Denton, Jianfei Wu, Megan K. Townsend, Pre...
BMCBI
2006
123views more  BMCBI 2006»
13 years 11 months ago
How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different result
Background: Short oligonucleotide arrays for transcript profiling have been available for several years. Generally, raw data from these arrays are analysed with the aid of the Mic...
Frank F. Millenaar, John Okyere, Sean T. May, Mart...
BMCBI
2006
131views more  BMCBI 2006»
13 years 11 months ago
inGeno - an integrated genome and ortholog viewer for improved genome to genome comparisons
Background: Systematic genome comparisons are an important tool to reveal gene functions, pathogenic features, metabolic pathways and genome evolution in the era of post-genomics....
Chunguang Liang, Thomas Dandekar