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» Similarities of Ordered Gene Lists
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BMCBI
2007
90views more  BMCBI 2007»
13 years 11 months ago
Gene network interconnectedness and the generalized topological overlap measure
Background: Network methods are increasingly used to represent the interactions of genes and/ or proteins. Genes or proteins that are directly linked may have a similar biological...
Andy M. Yip, Steve Horvath
KDD
2003
ACM
99views Data Mining» more  KDD 2003»
14 years 11 months ago
Fragments of order
High-dimensional collections of 0-1 data occur in many applications. The attributes in such data sets are typically considered to be unordered. However, in many cases there is a n...
Aristides Gionis, Teija Kujala, Heikki Mannila
SIAMCOMP
2010
100views more  SIAMCOMP 2010»
13 years 9 months ago
Algorithmic Enumeration of Ideal Classes for Quaternion Orders
We provide algorithms to count and enumerate representatives of the (right) ideal classes of an Eichler order in a quaternion algebra defined over a number field. We analyze the ...
Markus Kirschmer, John Voight
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 9 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
BMCBI
2007
152views more  BMCBI 2007»
13 years 11 months ago
Difference-based clustering of short time-course microarray data with replicates
Background: There are some limitations associated with conventional clustering methods for short time-course gene expression data. The current algorithms require prior domain know...
Jihoon Kim, Ju Han Kim