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PROMISE
2010
13 years 5 months ago
Replication of defect prediction studies: problems, pitfalls and recommendations
Background: The main goal of the PROMISE repository is to enable reproducible, and thus verifiable or refutable research. Over time, plenty of data sets became available, especial...
Thilo Mende
SIGIR
2009
ACM
14 years 4 months ago
Evaluating web search using task completion time
We consider experiments to measure the quality of a web search algorithm based on how much total time users take to complete assigned search tasks using that algorithm. We first ...
Ya Xu, David Mease
BMCBI
2008
117views more  BMCBI 2008»
13 years 10 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
BMCBI
2006
88views more  BMCBI 2006»
13 years 10 months ago
A two-sample Bayesian t-test for microarray data
Background: Determining whether a gene is differentially expressed in two different samples remains an important statistical problem. Prior work in this area has featured the use ...
Richard J. Fox, Matthew W. Dimmic
BMCBI
2008
82views more  BMCBI 2008»
13 years 10 months ago
Standardized high-throughput evaluation of cell-based compound screens
Background: High-throughput screening of pharmaceutical compound activity in tissue culture experiments requires time-consuming repeated analysis of the large amounts of data gene...
Peter Frommolt, Roman K. Thomas