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BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
CCECE
2006
IEEE
14 years 1 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
BMCBI
2004
144views more  BMCBI 2004»
13 years 7 months ago
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Background: The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for pred...
David M. A. Martin, Matthew Berriman, Geoffrey J. ...
KDD
2006
ACM
198views Data Mining» more  KDD 2006»
14 years 8 months ago
Event detection from evolution of click-through data
Previous efforts on event detection from the web have focused primarily on web content and structure data ignoring the rich collection of web log data. In this paper, we propose t...
Qiankun Zhao, Tie-Yan Liu, Sourav S. Bhowmick, Wei...
AAAI
2000
13 years 9 months ago
Recognizing End-User Transactions in Performance Management
Providing good quality of service (e.g., low response times) in distributed computer systems requires measuring enduser perceptions of performance. Unfortunately, such measures ar...
Joseph L. Hellerstein, T. S. Jayram, Irina Rish