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BMCBI
2008
214views more  BMCBI 2008»
13 years 10 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
ICPPW
2008
IEEE
14 years 4 months ago
Non-Contiguous I/O Support for Object-Based Storage
The access patterns performed by disk-intensive applications vary widely, from simple contiguous reads or writes through an entire file to completely unpredictable random access....
Dennis Dalessandro, Ananth Devulapalli, Pete Wycko...
ICCAD
1999
IEEE
181views Hardware» more  ICCAD 1999»
14 years 2 months ago
A new heuristic for rectilinear Steiner trees
The minimum rectilinear Steiner tree (RST) problem is one of the fundamental problems in the field of electronic design automation. The problem is NP-hard, and much work has been ...
Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganle...
PLDI
2012
ACM
12 years 8 days ago
Understanding and detecting real-world performance bugs
Developers frequently use inefficient code sequences that could be fixed by simple patches. These inefficient code sequences can cause significant performance degradation and ...
Guoliang Jin, Linhai Song, Xiaoming Shi, Joel Sche...
PLDI
2010
ACM
14 years 7 months ago
A Context-free Markup Language for Semi-structured Text
An ad hoc data format is any non-standard, semi-structured data format for which robust data processing tools are not available. In this paper, we present ANNE, a new kind of mark...
Qian Xi, David Walker