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BMCBI
2005
158views more  BMCBI 2005»
13 years 7 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
SODA
2008
ACM
108views Algorithms» more  SODA 2008»
13 years 9 months ago
Price based protocols for fair resource allocation: convergence time analysis and extension to Leontief utilities
We analyze several distributed, continuous time protocols for a fair allocation of bandwidths to flows in a network (or resources to agents). Our protocols converge to an allocati...
Ashish Goel, Hamid Nazerzadeh
MVA
2010
206views Computer Vision» more  MVA 2010»
13 years 2 months ago
Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images
Images of cellular structures in growing plant roots acquired using confocal laser scanning microscopy (CLSM) have some unusual properties that make motion estimation challenging....
Timothy J. Roberts, Stephen J. McKenna, Cheng-Jin ...
SIGMETRICS
2008
ACM
113views Hardware» more  SIGMETRICS 2008»
13 years 7 months ago
Layered interval codes for tcam-based classification
Ternary content-addressable memories (TCAMs) are increasingly used for high-speed packet classification. TCAMs compare packet headers against all rules in a classification database...
Anat Bremler-Barr, David Hay, Danny Hendler, Boris...
BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick