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RECOMB
2006
Springer
14 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
SASN
2004
ACM
14 years 3 months ago
Revisiting random key pre-distribution schemes for wireless sensor networks
Key management is one of the fundamental building blocks of security services. In a network with resource constrained nodes like sensor networks, traditional key management techni...
Joengmin Hwang, Yongdae Kim
SODA
2008
ACM
96views Algorithms» more  SODA 2008»
13 years 11 months ago
Unconditionally reliable message transmission in directed networks
In the unconditionally reliable message transmission (URMT) problem, two non-faulty players, the sender S and the receiver R are part of a synchronous network modeled as a directe...
Bhavani Shankar, Prasant Gopal, Kannan Srinathan, ...
PODC
2010
ACM
14 years 1 months ago
Deterministic distributed vertex coloring in polylogarithmic time
Consider an n-vertex graph G = (V, E) of maximum degree ∆, and suppose that each vertex v ∈ V hosts a processor. The processors are allowed to communicate only with their neig...
Leonid Barenboim, Michael Elkin