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» Smoothing Gene Expression Using Biological Networks
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ATVA
2008
Springer
131views Hardware» more  ATVA 2008»
13 years 9 months ago
Computation Tree Regular Logic for Genetic Regulatory Networks
Model checking has proven to be a useful analysis technique not only for concurrent systems, but also for the genetic regulatory networks (Grns) that govern the functioning of livi...
Radu Mateescu, Pedro T. Monteiro, Estelle Dumas, H...
RECOMB
2010
Springer
13 years 6 months ago
Predicting Nucleosome Positioning Using Multiple Evidence Tracks
Abstract. We describe a probabilistic model, implemented as a dynamic Bayesian network, that can be used to predict nucleosome positioning along a chromosome based on one or more g...
Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, ...
BMCBI
2007
153views more  BMCBI 2007»
13 years 7 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
IPPS
2008
IEEE
14 years 1 months ago
Parallelized preprocessing algorithms for high-density oligonucleotide arrays
Studies of gene expression using high-density oligonucleotide microarrays have become standard in a variety of biological contexts. The data recorded using the microarray techniqu...
Markus Schmidberger, Ulrich Mansmann
BMCBI
2004
122views more  BMCBI 2004»
13 years 7 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich