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» Smoothing Gene Expression Using Biological Networks
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BMCBI
2008
155views more  BMCBI 2008»
13 years 9 months ago
Extending pathways based on gene lists using InterPro domain signatures
Background: High-throughput technologies like functional screens and gene expression analysis produce extended lists of candidate genes. Gene-Set Enrichment Analysis is a commonly...
Florian Hahne, Alexander Mehrle, Dorit Arlt, Annem...
ISBI
2006
IEEE
14 years 9 months ago
Clustering gene expression patterns of fly embryos
The spatio-temporal patterning of gene expression in early embryos is an important source of information for understanding the functions of genes involved in development. Most ana...
Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugen...
FUIN
2002
123views more  FUIN 2002»
13 years 8 months ago
Learning Rough Set Classifiers from Gene Expressions and Clinical Data
Biological research is currently undergoing a revolution. With the advent of microarray technology the behavior of thousands of genes can be measured simultaneously. This capabilit...
Herman Midelfart, Henryk Jan Komorowski, Kristin N...
BMCBI
2007
130views more  BMCBI 2007»
13 years 9 months ago
A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
Background: Proteins are the primary regulatory agents of transcription even though mRNA expression data alone, from systems like DNA microarrays, are widely used. In addition, th...
Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra,...
BMCBI
2006
144views more  BMCBI 2006»
13 years 9 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...