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BMCBI
2007
148views more  BMCBI 2007»
13 years 8 months ago
Toward the automated generation of genome-scale metabolic networks in the SEED
Background: Current methods for the automated generation of genome-scale metabolic networks focus on genome annotation and preliminary biochemical reaction network assembly, but d...
Matthew DeJongh, Kevin Formsma, Paul Boillot, John...
BMCBI
2005
132views more  BMCBI 2005»
13 years 8 months ago
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...
SIGSOFT
2006
ACM
14 years 9 months ago
User guidance for creating precise and accessible property specifications
Property specifications concisely describe aspects of what a system is supposed to do. No matter what notation is used to describe them, however, it is difficult to represent thes...
Rachel L. Cobleigh, George S. Avrunin, Lori A. Cla...
SIGSOFT
2003
ACM
14 years 9 months ago
Behaviour model elaboration using partial labelled transition systems
State machine based formalisms such as labelled transition systems (LTS) are generally assumed to be complete descriptions m behaviour at some level of abstraction: if a labelled ...
Sebastián Uchitel, Jeff Kramer, Jeff Magee
SOSP
2009
ACM
14 years 5 months ago
Debugging in the (very) large: ten years of implementation and experience
Windows Error Reporting (WER) is a distributed system that automates the processing of error reports coming from an installed base of a billion machines. WER has collected billion...
Kirk Glerum, Kinshuman Kinshumann, Steve Greenberg...