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» Solutions to Computational Problems Through Gene Assembly
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DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
14 years 1 months ago
Solutions to Computational Problems Through Gene Assembly
Abstract. Gene assembly in ciliates is an impressive computational process. Ciliates have a unique way of storing their genetic information in two fundamentally different forms wi...
Artiom Alhazov, Ion Petre, Vladimir Rogojin
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
14 years 1 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
BMCBI
2007
159views more  BMCBI 2007»
13 years 7 months ago
Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
Background: A finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level. Results: We ...
Israel Mark Martínez-Pérez, Gong Zha...
UC
2007
Springer
14 years 1 months ago
Computing Through Gene Assembly
Tseren-Onolt Ishdorj, Ion Petre
FUIN
2008
96views more  FUIN 2008»
13 years 7 months ago
Computational Efficiency of Intermolecular Gene Assembly
In this paper, we investigate the computational efficiency of gene rearrangement operations found in ciliates, a type of unicellular organisms. We show how the so-called guided re...
Tseren-Onolt Ishdorj, Remco Loos, Ion Petre