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» Solutions to Computational Problems Through Gene Assembly
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JCB
2008
170views more  JCB 2008»
13 years 7 months ago
Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison
The spatial clustering of genes across different genomes has been used to study important problems in comparative genomics, from identification of operons to detection of homologo...
Xu Ling, Xin He, Dong Xin, Jiawei Han
BMCBI
2007
148views more  BMCBI 2007»
13 years 7 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
ISMB
2000
13 years 9 months ago
Analysis of Gene Expression Microarrays for Phenotype Classification
Several microarray technologies that monitor the level of expression of a large number of genes have recently emerged. Given DNA-microarray data for a set of cells characterized b...
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu
ICCS
2005
Springer
14 years 1 months ago
Phylogenetic Networks, Trees, and Clusters
Phylogenetic networks model evolutionary histories in the presence of non-treelike events such as hybrid speciation and horizontal gene transfer. In spite of their widely acknowled...
Luay Nakhleh, Li-San Wang
CAV
2010
Springer
251views Hardware» more  CAV 2010»
13 years 11 months ago
Automated Assume-Guarantee Reasoning through Implicit Learning
Abstract. We propose a purely implicit solution to the contextual assumption generation problem in assume-guarantee reasoning. Instead of improving the L∗ algorithm — a learnin...
Yu-Fang Chen, Edmund M. Clarke, Azadeh Farzan, Min...