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» Some Notes on Models and Modelling
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CORR
2006
Springer
90views Education» more  CORR 2006»
13 years 7 months ago
About the Lifespan of Peer to Peer Networks
In this paper we analyze the ability of peer to peer networks to deliver a complete file among the peers. Early on we motivate a broad generalization of network behavior organizing...
Rudi Cilibrasi, Zvi Lotker, Alfredo Navarra, St&ea...
BMCBI
2007
165views more  BMCBI 2007»
13 years 7 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
BMCBI
2007
105views more  BMCBI 2007»
13 years 7 months ago
Finding regulatory elements and regulatory motifs: a general probabilistic framework
Over the last two decades a large number of algorithms has been developed for regulatory motif finding. Here we show how many of these algorithms, especially those that model bind...
Erik van Nimwegen
BMCBI
2007
131views more  BMCBI 2007»
13 years 7 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
IANDC
2006
77views more  IANDC 2006»
13 years 7 months ago
Lower and upper bounds on obtaining history independence
Abstract. History independent data structures, presented by Micciancio, are data structures that possess a strong security property: even if an intruder manages to get a copy of th...
Niv Buchbinder, Erez Petrank
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